How JGA dataset was generated

JGA-NGS

Analysis pipeline software (Amelieff BioReT Ver.3.3.1.1) that can execute the following group of analysis tools was used.

Tool nameVersion
qcleaner4.1.0
SAM tools1.6
FastQC0.11.5
calcCoverage1.7
BWA0.7.16a
igvtools2.3.98
Picard2.13.2
GATK3.8.0-ge9d806836
SnpEffv4.3_core
bedtools2.13.3