How JGA dataset was generated
JGA-NGS
Analysis pipeline software (Amelieff BioReT Ver.3.3.1.1) that can execute the following group of analysis tools was used.
Tool name | Version |
qcleaner | 4.1.0 |
SAM tools | 1.6 |
FastQC | 0.11.5 |
calcCoverage | 1.7 |
BWA | 0.7.16a |
igvtools | 2.3.98 |
Picard | 2.13.2 |
GATK | 3.8.0-ge9d806836 |
SnpEff | v4.3_core |
bedtools | 2.13.3 |