JGA-SNP dataset

Summary

JGA-SNP dataset is a frequency dataset that has aggregated variants detected from SNP-chip data in the NBDC Human Database/Japanese Genotype-phenotype Archive (JGA). All JGA data for which an approval for creating secondary data has been obtained are to be aggregated. Note that no variants with 5 alternative alleles or less are included.

Terms of use

Rights of Data Users

The rights of data users shall conform to "5-2-1. Open Data" in "5-2. Rights of Data Users" listed in the NBDC Human Data Sharing Guidelines.

  1. The data user can freely present the result of the study for which data from the NBDC Human Database are used.
  2. The data user can freely acquire intellectual property rights based on the result of the study for which data from the NBDC Human Database are used.

Responsibilities of Data Users

Responsibilities of data users shall conform to "5-3-1. Open Data" in "5-3. Responsibilities of Data Users" listed in the NBDC Human Data Sharing Guidelines.

  1. In using data, the user must take responsibility for and make judgments concerning the quality, content, and scientific validity of the data.
  2. The data user must comply with the following rules.
    • The use of data is limited to the study being undertaken.
    • Identification of individuals is prohibited
    • Redistribution of data is prohibited.
  3. The data user must add the following citation while using the data in public (e.g. publishing an article).

    Variant dataset aggregated from SNP-chip data in NBDC Human Database/JGA [Internet]. Tokyo: Japan Science and Technology Agency (Japan), National Bioscience Database Center; [2018] - . JGA-SNP dataset; [cited YYYY Mmm DD]. Available from: https://togovar.biosciencedbc.jp/doc/datasets/jga_snp

Derivations of aggregated data

JGAID Human DB ID Study title Participants Sample size Data provider
JGAD00000000123 hum0014 Biobank Japan Project BMI research participants 182,557 Michiaki Kubo
JGAD00000000018 hum0028 Biobank Japan Project Healthy control 908 Michiaki Kubo
JGAD00000000130/131 hum0082 Genome-wide analysis of SNPs in Healthy Japanese Healthy control 419 Katsushi Tokunaga
Total 183,884