Terms of Use

This database (the database) is licensed under the Open Database License(ODbL).

You are free:

As long as you:

This license does not cover each data (content) that has been imported into the database. While using the contents, follow the licenses of the following data distributors.

This is a human-readable summary of the license. See the entire text of ODbL 1.0 License Agreement for the actual license terms to be applied. In addition, refer to Attribution (credit) display examples. For license display, refer to the description of Examples of ODbL license usage.

Attribution (credit) display examples

1. How to cite the use of the TogoVar database

If you want to cite the entire TogoVar database

TogoVar [Internet]. Tokyo: Japan Science and Technology Agency (Japan), National Bioscience Database Center; 2018 - [cited YYYY Mmm DD]. Available from: https://togovar.biosciencedbc.jp

If you want to cite specific variants (tgv47264307) of TogoVar

Variant [Internet]. Tokyo: Japan Science and Technology Agency (Japan), National Bioscience Database Center; [2018] - . TogoVarID tgv47264307; [cited YYYY Mmm DD]. Available from: https://togovar.biosciencedbc.jp/variant/tgv47264307

2. How to cite data (content) that has been imported into the TogoVar database

You must cite these contents in the methods specified below, according to the content used. Formally, refer to the terms of use for each content.

Colil [Terms of use: http://colil.dbcls.jp/portal/index_en.html]

T. Fujiwara and Y. Yamamoto, "Colil: a database and search service for citation contexts in the life sciences domain.", Journal of Biomedical Semantics, 6:38 (19 October 2015). doi:10.1186/s13326-015-0037-x

ExAC [Terms of use: http://exac.broadinstitute.org/about]

Lek, M., Karczewski, K. J., Minikel, E. V., Samocha, K. E., Banks, E., Fennell, T., … Consortium, E. A. (2016). Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536(7616), 285-291. http://doi.org/10.1038/nature19057

HGVD Release Version 2.30 (08/02/2017) [Terms of use: http://www.hgvd.genome.med.kyoto-u.ac.jp/about.html]

K. Higasa et al. "Human genetic variation database, a reference database of genetic variations in the Japanese population" J Hum Genet 61:547-553, 2016, doi: 10.1038/jhg.2016.12

Integrative Japanese Genome Variation Database 3.5KJPN [Terms of use: https://ijgvd.megabank.tohoku.ac.jp/download_3.5kjpn/?lang=ja]

(Long version)

Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals, Nagasaki M, Yasuda J, Katsuoka F, Nariai N, Kojima K, Kawai Y, Yamaguchi-Kabata Y, Yokozawa J, Danjoh I, Saito S, Sato Y, Mimori T, Tsuda K, Saito R, Pan X, Nishikawa S, Ito S, Kuroki Y, Tanabe O, Fuse N, Kuriyama S, Kiyomoto H, Hozawa A, Minegishi N, Douglas Engel J, Kinoshita K, Kure S, Yaegashi N, ToMMo Japanese Reference Panel Project and Yamamoto M, Nat Commun, 21; 6:8018 (2015)

(Short version)

Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals, Nagasaki M, Yasuda J, Katsuoka F, ToMMo Japanese Reference Panel Project and Yamamoto M, Nat Commun, 21; 6:8018 (2015)

PubTator [Terms of use: ftp://ftp.ncbi.nlm.nih.gov/pub/lu/PubTator/README.txt]

Wei CH et. al., PubTator: a Web-based text mining tool for assisting Biocuration, Nucleic acids research, 2013, 41 (W1): W518-W522. doi: 10.1093/nar/gkt44

JGA-NGS dataset [Terms of use: https://togovar.biosciencedbc.jp/datasets/jga_ngs]

Variant set aggregated from NGS data in NBDC Human Database/JGA [Internet]. Tokyo: Japan Science and Technology Agency (Japan), National Bioscience Database Center; [2018] - . JGA-NGS dataset; [cited YYYY Mmm DD]. Available from: https://togovar.biosciencedbc.jp/datasets/jga_ngs

JGA-SNP dataset [Terms of use: https://togovar.biosciencedbc.jp/datasets/jga_snp]

Variant set aggregated from SNP-chip data in NBDC Human Database/JGA [Internet]. Tokyo: Japan Science and Technology Agency (Japan), National Bioscience Database Center; [2018] - . JGA-SNP dataset; [cited YYYY Mmm DD]. Available from: https://togovar.biosciencedbc.jp/datasets/jga_ngs

Examples of ODbL license usage