Terms of Use

This database (the database) is licensed under the Open Database License(ODbL).

You are free:

  • To Share: To copy, distribute and use the database.
  • To Create: To produce works from the database.
  • To Adapt: To modify, transform and build upon the database.

As long as you:

  • Attribute: You must attribute any public use of the database, or works produced from the database, in the manner specified in the ODbL. For any use or redistribution of the database, or works produced from it, you must make clear to others the license of the database and keep intact any notices on the original database.
  • Share-Alike: If you publicly use any adapted version of this database, or works produced from an adapted database, you must also offer that adapted database under the ODbL.
  • Keep open: If you redistribute the database, or an adapted version of it, then you may use technological measures that restrict the work (such as DRM) as long as you also redistribute a version without such measures.

This license does not cover each data (content) that has been imported into the database. While using the contents, follow the licenses of the following data distributors.

This isa human-readable summary of the license. Seethe entire text of ODbL 1.0 License Agreementfor the actual license terms to be applied. In addition, refer toAttribution (credit) display examples. For license display, refer to the description ofExamples of ODbL license usage.

Attribution (credit) display examples

  1. How to cite the use of the TogoVar database

    If you want to cite the entire TogoVar database
    TogoVar [Internet]. Tokyo: Japan Science and Technology Agency (Japan), National Bioscience Database Center; 2018 - [cited YYYY Mmm DD]. Available from:https://togovar.biosciencedbc.jp
    If you want to cite specific variants (tgv47264307) of TogoVar
    Variant [Internet]. Tokyo: Japan Science and Technology Agency (Japan), National Bioscience Database Center; [2018] - . TogoVarID tgv47264307; [cited YYYY Mmm DD]. Available from:https://togovar.biosciencedbc.jp/variant/tgv47264307
  2. How to cite data (content) that has been imported into the TogoVar database

    You must cite these contents in the methods specified below, according to the content used. Formally, refer to the terms of use for each content.
    Colil [Terms of use: http://colil.dbcls.jp/portal/index_en.html]
    T. Fujiwara and Y. Yamamoto, "Colil: a database and search service for citation contexts in the life sciences domain.", Journal of Biomedical Semantics, 6:38 (19 October 2015). doi:10.1186/s13326-015-0037-x
    ExAC [Terms of use: http://exac.broadinstitute.org/about]
    Lek, M., Karczewski, K. J., Minikel, E. V., Samocha, K. E., Banks, E., Fennell, T., … Consortium, E. A. (2016). Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536(7616), 285-291.http://doi.org/10.1038/nature19057
    HGVD Release Version 2.30 (2017/08/02) [Terms of use: http://www.hgvd.genome.med.kyoto-u.ac.jp/about.html]
    K. Higasa et al. "Human genetic variation database, a reference database of genetic variations in the Japanese population" J Hum Genet 61:547-553, 2016, doi: 10.1038/jhg.2016.12
    Japanese Multi Omics Reference Panel (jMorp) 3.5KJPNv2 [Terms of use: https://jmorp.megabank.tohoku.ac.jp/help/conditions-of-use]
    "3.5KJPNv2, an allele frequency panel of 3,552 Japanese Individuals including the X chromosome", Tadaka S, Katsuoka F, et al., Human Genome Variation, 2019; doi: https://doi.org/10.1038/s41439-019-0059-5
    PubTator [Terms of use: ftp://ftp.ncbi.nlm.nih.gov/pub/lu/PubTator/README.txt]
    Wei CH et. al., PubTator: a Web-based text mining tool for assisting Biocuration, Nucleic acids research, 2013, 41 (W1): W518-W522. doi: 10.1093/nar/gkt44
    JGA-NGS dataset [Terms of use: https://togovar.biosciencedbc.jp/doc/datasets/jga_ngs]
    Variant set aggregated from NGS data in NBDC Human Database/JGA [Internet]. Tokyo: Japan Science and Technology Agency (Japan), National Bioscience Database Center; [2018] - . JGA-NGS dataset; [cited YYYY Mmm DD]. Available from:https://togovar.biosciencedbc.jp/doc/datasets/jga_ngs
    JGA-SNP dataset [Terms of use: https://togovar.biosciencedbc.jp/doc/datasets/jga_snp]
    Variant set aggregated from SNP-chip data in NBDC Human Database/JGA [Internet]. Tokyo: Japan Science and Technology Agency (Japan), National Bioscience Database Center; [2018] - . JGA-SNP dataset; [cited YYYY Mmm DD]. Available from:https://togovar.biosciencedbc.jp/doc/datasets/jga_ngs

Examples of ODbL license usage